Publications

Winkel, M., Salman, V., Woyke, T., Richter, M., Schulz-Vogt, H., Flood, B.E., Bailey, J.V., Mußmann, M., 2016, Single-cell sequencing of Thiomargarita reveals genomic flexibility for adaptation to dynamic redox conditions. Frontiers in Extreme Microbiology.

Flood, B.E., Fliss, P., Jones, D.S.,  Dick, G., Jain, S. Kaster, A.K., Winkel, M. Mubmann, Bailey, J.V. (2016) Single-Cell (Meta-)Genomics of a Dimorphic Candidatus Thiomargarita nelsonii Reveals Genomic Plasticity. Frontiers in Extreme Microbiology. 7:603. doi: 10.3389/fmicb.2016.00603

Harrison, B.K.*, Myrbo, A., Flood, B.E.*, Bailey, J.V. (2016) Recovery of subannual microbial community information from individual sedimentary laminae using a freeze-coring approach. Limnology and Oceanography, DOI: 10.1002/lno.10250

Journal articles (*indicates advisee or lab-affiliated postdoctoral author; §indicates authors contributed equally. Note: the PI is traditionally associated with the final author position in biology journals, while the PI is commonly listed as second author in the earth sciences journals.

Flood, B.E.*, Jones, D.S.*, Bailey, J.V., 2015, The complete genome of Sedimenticola thiotaurini strain SIP-G1, a polyphosphate and polyhydroxyalkanoate-accumulating sulfur-oxidizing gammaproteobacterium isolated from salt marsh sediments. ASM Genome Announcements. 3(3), doi: 10.1128/genomeA.00671-15.

Stevens, E.N.*, Bailey, J.V., Flood, B.E.*, Jones, D.S.*, Gilhooly III, W.P., Joye, S.B., Teske, A., Mason, O.U., (2015) Barite encrustation of benthic sulfur-oxidizing bacteria at a marine cold seep. Geobiology. DOI: 10.1111/gbi.12154.  Link

Jones, D.S.*, Flood, B.E. *, Bailey, J.V., (2015) Metatranscriptomic insights into polyphosphate metabolism in marine sediments. ISME Journal. DOI:10.1038/ismej.2015.169  Link

Mason, O.U. §, Case, D.H.§, Naehr, T.H., Lee, R.W., Thomas, R.B., Bailey, J.V., Orphan, V.J., (2015) Comparison of archaeal and bacterial diversity in methane seep carbonate nodules and host sediments, Eel River Basin and Hydrate Ridge, USA. Microbial Ecology; DOI 10.1007/s00248-015-0615-6

Flood, B.E. *, Bailey, J.V., Jones, D.S.*, (2015) Sedimenticola thiotaurini sp. nov., a sulfide-oxidizing bacterium isolated from saltmarsh sediments, emended description of the genus Sedimenticola and holotype strain Sedimenticola selenatireducens. International Journal of Systematic and Evolutionary Microbiology. doi: 10.1099/ijs.0.000295

Jones, D.S.*, Flood, B.E. *, Bailey, J.V. (2015) Metatranscriptomic analysis of diminutive Thiomargarita-like bacteria (“Candidatus Thiopilula spp.”) from abyssal cold seeps of the Barbados Accretionary Prism. Applied and Environmental Microbiology. v. 81, p.3142–3156.

Vietti, L.A.*, Bailey, J.V., Fox, D.L., and Rogers, R.R., (2015) Rapid formation of framboidal sulfides on bone surfaces from a simulated marine carcass fall. Palaios. v. 30.

Crosby, C.H., Bailey, J.V., and Sharma, M. (2014) Fossil evidence of iron-oxidizing chemolithotrophy linked to phosphogenesis in the wake of the Great Oxidation Event. Geology, v. 42, p. 1015-1018.

Flood, B.E, Bailey, J.V., Biddle, J.F. (2014), Horizontal gene transfer and the rock record: comparative genomics of phylogenetically distant bacteria that induce wrinkle structure formation in modern sediments.  Geobiology. v. 12, p. 119-132. doi: 10.1111/gbi.12072.

Salman, V., Bailey, J.V., Teske, A. (2013) Phylogenetic and morphologic complexity of giant sulphur bacteria. Antonie Van Leeuwenhoek v.104(2):169-86. doi: 10.1007/s10482-013-9952

Bailey, J.V., Corsetti, F.A., Greene, S.E., Crosby, C.H.*, Liu, P., Orphan, V.J., (2013) Filamentous sulfur bacteria preserved in modern and ancient phosphatic sediments: implications for the role of oxygen and bacteria in phosphogenesis. Geobiology, v. 11, p. 397-405 doi: 10.1111/gbi.12046

Crosby, C.H.*, Bailey, J.V., 2012, The role of microbes in the formation of modern and ancient phosphatic mineral deposits. Frontiers in Aquatic Microbiology. v. 3, p. 3-9:241. doi: 10.3389/fmicb.2012.00241

Cunningham, J. A., Thomas, C.-W., Bengtson, S., Marone, F., Stampanoni, M., Turner, F. R., Bailey, J. V., Raff, R. A., Raff, E. C., Donoghue, P. C. J., 2012, Experimental taphonomy of giant sulphur bacteria: implications for the interpretation of the embryo-like Ediacaran Doushantuo fossils. Proceedings of the Royal Society B, v. 279, 1857-1864.

Bailey, J.V., Salman, V., Rouse, G.W., Schulz-Vogt, H.N., Levin, L.A., Orphan, V.J., 2011, Dimorphism in methane seep-dwelling ecotypes of the largest known bacteria. ISME Journal v. 5, p. 1926-1935.

Bailey, J.V., 2011, Breathing room for early animals. Nature Geoscience., v. 4, p. 354-355.

Salman, V., Amann, R., Girnth, A-C., Polerecky, L., Bailey, J.V., Høgslund, S., Jessen, G., Pantoja, S., and Schulz-Vogt, H., 2011, A single-cell sequencing approach to the classification of large, vacuolated sulfide-oxidizing bacteria. Systematic and Applied Microbiology, v. 34, p. 243-259.

Bailey, J.V., Raub, T.D., Meckler, A.N., Harrison, B.K., Raub, T.M.D., Green, A.M., and Orphan, V.J., 2010, Pseudofossils in relict methane seep carbonates resemble endemic microbial consortia. Palaeogeography, Palaeoclimatology, Palaeoecology, v. 285, p. 131-142.

Bailey, J.V., Orphan, V.J., Joye, S.B., and Corsetti, F.A., 2009, Chemotrophic microbial mats and their potential for preservation in the rock record. Astrobiology, v. 9, p. 843-859.

Bailey, J.V., Joye, S.B., Kalanetra, K.M., Flood, B.E., and Corsetti, F.A., 2007, Undressing and redressing Ediacaran embryos – reply to brief communication arising, Nature, doi:10.1038/nature05753.

Bailey, J.V., Joye, S.B., Kalanetra, K.M., Flood, B.E., and Corsetti, F.A., 2007, Evidence of giant sulphur bacteria in Neoproterozoic phosphorites. Nature, v. 445, p. 198-201.

Bailey, J.V., Corsetti, F.A., Bottjer, D.J., and Marenco, K.N., 2006, Microbially-Mediated Environmental Influences on Metazoan Colonization of Matground Ecosystems: Evidence from the Lower Cambrian Harkless Formation. Palaios, v. 21, p. 215-226.

Bailey, J.V., Cohen, A.S., and Kring, D.A., 2005, Lacustrine Fossil Preservation in Acidic Environments: Implications of Experimental and Field Studies for the Cretaceous-Paleogene Boundary Acid Rain Trauma. Palaios, v. 20, p. 376-389.