| Publications |
|---|
| Leprich, D.J.*, Flood, B.E, Schroedl, P. *, Ricci, E. *, Marlow, J.J., Girguis, P., Bailey, J.V., 2021, Sulfur bacteria promote authigenic carbonate dissolution at marine methane seeps. ISME Journal. https://doi.org/10.1038/s41396-021-00903-3 |
| Petryshyn, V.A., Junkins, E.N., Stamps, B.W., Bailey, J.V., Stevenson, B.S., Spear, J.R., Corsetti, F.A., 2021, Builders, tenants, and squatters: The origins of genetic material in modern stromatolites. Geobiology. DOI: 10.1111/gbi.12429 |
| Nayfach S et al. (Bailey part of IMG/M Data Consortium, 185 co-authors), 2020, A Genomic Catalog of Earth’s Microbiomes. Nature Biotechnology. 2020 Nov 9. doi: 10.1038/s41587-020-0718-6. |
| Jones, D., Johnson, N.W., Mitchell, C., Walker, G., Bailey, J.V., Pastor, J., Swain, E., 2020, Diverse communities of hgcAB+ microorganisms methylate mercury in freshwater sediments subjected to experimental sulfate loading. Environmental Science & Technology. 54 (22), 14265-14274, https://doi.org/10.1021/acs.est.0c02513 |
| Medina-Ferrer, F.*, Hobart, K.H., Bailey, J.V., 2020, Field detection of urease and carbonic anhydrase activity using rapid and economical tests to assess microbially-induced carbonate precipitation, Microbial Biotechnology. 13(6), https://doi.org/10.1111/1751-7915.13630 |
| Larina, E., Bottjer, D.J., Corsetti, F.A., Zonneveld, J-P. Celestian, A., Bailey, J.V., 2019, Uppermost Triassic phosphorites from Willison Lake, Canada: link to fluctuating euxinic-anoxic conditions in northeastern Panthalassa before the end-Triassic mass extinction. Scientific Reports, v.9, Article number: 18790. |
| Lumiste, K., Mänd, K., Bailey, J.V., Paiste, P., Lang, L., Lepland, A., Kirsimäe, K., 2019, REE+Y uptake and diagenesis in Recent sedimentary apatites. Chemical Geology. doi.org/10.1016/j.chemgeo.2019.07.034 |
| Jones, D.S.*, Walker, G.M., Johnson, N.W., Mitchell, C.P.J., Coleman Wasik, J.K., Bailey, J.V., 2019, Molecular evidence for novel mercury methylating microorganisms in sulfate-impacted lakes. ISME Journal. https://doi.org/10.1038/s41396-019-0376-1 |
| Zoss, R.*, Medina-Ferrer*, F., Flood, B.E.*, Jones, D.S.*, Louw, D.C., Bailey, J.V., 2019, Microbial communities associated with phosphogenic sediments and phosphoclast-associated DNA of the Benguela Upwelling System. Geobiology, 17:76–90. https://doi.org/10.1111/gbi.12318 |
| Flood, B.E.*, Leprich, D.*, Bailey, J.V., 2018, The complete genome of Celeribacter baekdonensis strain LH4, a thiosulfate-oxidizing alphaproteobacterial isolate from Gulf of Mexico continental slope sediments. ASM Genome Announcements. |
| Mänd, K., Kirsimäe, K., Lepland, A., Crosby C.H.*, Bailey, J.V., Konhauser, K., Wirth, R., Schreiber, A., and Lumiste, K., 2018, Authigenesis of biomorphic apatite particles from modern upwelling zone sediments off Namibia. 640–658 Geobiology. 10.1111/gbi.12309 |
| Medina-Ferrer, F.* §, Bailey, J.V. §, Corsetti, F., Moldowan, J.M, Barbanti, S.M., Caron, D., Bryant-Huppert, J.*, 2018, Assessing biomarker syngeneity: An in situ approach using monoclonal antibodies. Organic Geochemistry, v.124, 112-122. |
| Breiland, A., Flood, B.E., Nikrad, J., Bakarich, J., Husman, M., TaekHyun, R. , Jones, R. Bailey, J.V., 2018, Polyphosphate-accumulating bacteria: Potential contributors to mineral dissolution in the oral cavity. Applied and Environmental Microbiology. Volume 84, Issue 7. |
| Harrison, B.K., Myrbo, A., Flood, B.E., Bailey, J.V., 2018, Abrupt burial imparts persistent changes to the bacterial diversity of turbidite-associated sediment profiles. Geobiology. DOI: 10.1111/gbi.12271 |
| Bailey, J.V., Flood, B.E.*, Ricci, E.*, Delherbe, N.*, (2017) Imaging of cellular oxidoreductase activity suggests mixotrophic metabolisms in Thiomargarita spp. mBio. v. 8, No. 5, mBio01263-17. |
| Jones, D.S.*, Roepke, E.W., Hua, A.*, Flood, B.E.*, and Bailey, J.V., (2017) Complete genome sequence of Sulfuriferula sp. str. AH1, a sulfur-oxidizing autotroph isolated from weathered sulfide-bearing mine tailings from the Duluth Complex in Minnesota. ASM genome announcements. v. 5, no. 32. |
| Jones, D.S.*, Lapakko, K.A., Wenz, Z.J., Olson, M.C., Roepke, E.W., Sadowsky, M.J., Novak, P.J., Bailey, J.V., (2017) Novel microbial assemblages dominate weathered sulfide-bearing rock from copper-nickel deposits in the Duluth Complex, Minnesota, USA. Applied and Environmental Microbiology. v.83, no.16. |
| Crosby, C.H.*, Bailey, J.V., (2017) Experimental precipitation of apatite pseudofossils resembling fossil embryos, Geobiology. 2017;00:1–8. doi.org/10.1111/gbi.12264 |
| Crosby, C.H.*, Bailey, J.V., (2017), An economical apparatus for the observation and harvesting of mineral precipitation experiments with light microscopy. Biogeosciences 14, 2151–2154 |
| Sharrar, AM, Flood, B.E.*, Bailey, J.V., Jones, D.S.*, Biddanda, B.A., Ruberg, S.A., Marcus, D.N., and Dick, G.J., (2017) Novel large sulfur bacteria in the metagenomes of groundwater-fed chemosynthetic microbial mats in the Lake Huron basin, Frontiers in Extreme Microbiology. doi: 10.3389/fmicb.2017.00791. |
| Winkel, M., Salman, V., Woyke, T., Richter, M., Schulz-Vogt, H., Flood, B.E., Bailey, J.V., Mußmann, M., (2016) Single-cell sequencing of Thiomargarita reveals genomic flexibility for adaptation to dynamic redox conditions. Frontiers in Extreme Microbiology. |
| Flood, B.E.*, Fliss, P.*, Jones, D.S.*, Dick, G., Jain, S. Kaster, A.K., Winkel, M. Mumann, M. Bailey, J.V. (2016) Single-Cell (Meta-)Genomics of a Dimorphic Candidatus Thiomargarita nelsonii Reveals Genomic Plasticity. Frontiers in Extreme Microbiology. 7:603. doi: 10.3389/fmicb.2016.00603 |
| Harrison, B.K.*, Myrbo, A., Flood, B.E.*, Bailey, J.V. (2016) Recovery of subannual microbial community information from individual sedimentary laminae using a freeze-coring approach. Limnology and Oceanography, DOI: 10.1002/lno.10250 |
| Jones, D.S.*, Flood, B.E. *, Bailey, J.V. (2015) Metatranscriptomic insights into polyphosphate metabolism in marine sediments. ISME Journal. DOI:10.1038/ismej.2015.169 |
Stevens, E.N.*, Bailey, J.V., Flood, B.E.*, Jones, D.S.*, Gilhooly III, W.P., Joye, S.B.,
Teske, A., Mason, O.U., (2015) Barite encrustation of benthic sulfur-oxidizing bacteria at a marine cold seep. v.13, p.588-603 Geobiology. DOI: 10.1111/gbi.12154
Flood, B.E.*, Jones, D.S.*, Bailey, J.V., (2015) The complete genome of Sedimenticola
thiotaurini strain SIP-G1, a polyphosphate and polyhydroxyalkanoate-accumulating sulfur-oxidizing gammaproteobacterium isolated from salt marsh sediments. ASM Genome Announcements. 3(3), doi: 10.1128/genomeA.00671-15.
Mason, O.U. §, Case, D.H.§, Naehr, T.H., Lee, R.W., Thomas, R.B., Bailey, J.V., Orphan,
V.J., (2015) Comparison of archaeal and bacterial diversity in methane seep carbonate nodules and host sediments, Eel River Basin and Hydrate Ridge, USA. Microbial Ecology; DOI 10.1007/s00248-015-0615-6
Flood, B.E. *, Bailey, J.V., Jones, D.S.*, (2015) Sedimenticola thiotaurini sp. nov., a sulfide-
oxidizing bacterium isolated from saltmarsh sediments, emended description of the genus Sedimenticola and holotype strain Sedimenticola selenatireducens. International Journal of Systematic and Evolutionary Microbiology. doi: 10.1099/ijs.0.000295.
Jones, D.S.*, Flood, B.E. *, Bailey, J.V. (2015) Metatranscriptomic analysis of
diminutive Thiomargarita-like bacteria (“Candidatus Thiopilula spp.”) from abyssal cold seeps of the Barbados Accretionary Prism. Applied and Environmental Microbiology. v. 81, p.3142–3156.
Vietti, L.A.*, Bailey, J.V., Fox, D.L., and Rogers, R.R., (2015) Rapid formation of framboidal sulfides on bone surfaces from a simulated marine carcass fall. Palaios. v. 30, p. 327-334.
Crosby, C.H.*, Bailey, J.V., and Sharma, M., (2014), Fossil evidence of iron-oxidizing
chemolithotrophy linked to phosphogenesis in the wake of the Great Oxidation Event.
Geology, v. 42, p. 1015-1018.
Flood, B.E*§, Bailey, J.V.§, Biddle, J.F. (2014), Horizontal gene transfer and the rock
record: comparative genomics of phylogenetically-distant bacteria that induce wrinkle structure formation in modern sediments. Geobiology, v. 12, p. 119-132. doi: 10.1111/gbi.12072.
Salman, V., Bailey, J.V., Teske, A. (2013) Phylogenetic and morphologic complexity of giant
sulphur bacteria. Antonie Van Leeuwenhoek, v. 104, p. 169-86.
Bailey, J.V., Corsetti, F.A., Greene, S.E., Crosby, C.H.*, Liu, P., Orphan, V.J., (2013)
Filamentous sulfur bacteria preserved in modern and ancient phosphatic sediments:
implications for the role of oxygen and bacteria in phosphogenesis. Geobiology, v. 11, p. 397-
405.
Crosby, C.H.*, Bailey, J.V., 2012, The role of microbes in the formation of modern and ancient phosphatic mineral deposits, Frontiers in Aquatic Microbiology. v. 3, p. 3-9:241. doi: 10.3389/fmicb.2012.00241
Cunningham, J. A., Thomas, C.-W., Bengtson, S., Marone, F., Stampanoni, M., Turner, F. R.,
Bailey, J. V., Raff, R. A., Raff, E. C., Donoghue, P. C. J., 2012, Experimental taphonomy of giant sulphur bacteria: implications for the interpretation of the embryo-like Ediacaran Doushantuo fossils. Proceedings of the Royal Society B – Biological Sciences, 2012, v. 279, 1857-1864.
Bailey, J.V., Salman, V., Rouse, G.W., Schulz-Vogt, H.N., Levin, L.A., Orphan, V.J., 2011, Dimorphism in methane seep-dwelling ecotypes of the largest known bacteria. ISME Journal, v. 5, p. 1926-1935.
Salman, V., Amann, R., Girnth, A-C., Polerecky, L., Bailey, J.V., Høgslund, S., Jessen, G., Pantoja, S., and Schulz-Vogt, H., 2011, A single-cell sequencing approach to the classification of large, vacuolated sulfide-oxidizing bacteria. Systematic and Applied Microbiology, v. 34, p. 243-259.
Bailey, J.V., Raub, T.D., Meckler, A.N., Harrison, B.K., Raub, T.M.D., Green, A.M., Orphan, V.J., 2010, Pseudofossils in relict methane seep carbonates resemble endemic microbial consortia. Palaeogeography, Palaeoclimatology, Palaeoecology. v. 285, p. 131-142.
Bailey, J.V., Orphan, V.J., Joye, S.B., Corsetti, F.A., 2009, Chemotrophic microbial mats and their potential for preservation in the rock record. Astrobiology, v. 9, p. 843-859.
Bailey, J.V., Joye, S.B., Kalanetra, K.M., Flood, B.E., and Corsetti, F.A., 2007, Undressing and redressing Ediacaran embryos – reply to brief communication arising. Nature, doi:
10.1038/nature05753.
Bailey, J.V., Joye, S.B., Kalanetra, K.M., Flood, B.E., and Corsetti, F.A., 2007, Evidence of giant sulphur bacteria in Neoproterozoic phosphorites. Nature, v. 445, p. 198-201.
Bailey, J.V., Corsetti, F.A., Bottjer, D.J., and Marenco, K.N., 2006, Microbially-mediated environmental influences on metazoan colonization of matground ecosystems: evidence from the Lower Cambrian Harkless Formation. Palaios, v. 21, p. 215-226.
Bailey, J.V., Cohen, A.S., and Kring, D.A., 2005, Lacustrine fossil preservation in acidic environments: Implications of experimental and field studies for the
Cretaceous-Paleogene Boundary acid rain trauma. Palaios, v. 20, p. 376-389.